PRODRES: Protein Domain Reduced Search

Please paste your amino acid sequences in FASTA format (max 100000 chars)
Allowed characters: "ABCDEFGHIKLMNPQRSTUVWYZX*", of which "BUZ*" will be converted to 'X'
(Sequences should be no shorter than 10 amino acids)

Alternatively, upload a text file in FASTA format upto 100 MB:

Job name (optional):

Second search method: psiblast jackhmmer

Email (recommended for batch submissions):

Force run (do not use cached results):

Advanced options

Keep temporary results (only for single-sequence jobs):
Options for PfamScan
Bit-score
E-value
Show overlapping hits within clan
Options for Jackhmmer
Threshold Type	E-value   Bit-score
E-value
Bit-score
Iteration
Options for PSIBLAST
E-value
Iteration
Out format

      

Reference
PRODRES: Fast protein searches using a protein domain-reduced database. Pascarelli S*, Tsirigos KD*, Shu N*, Peters C* and Elofsson A [submitted to Bioinformatics]
Resource provider This work used the EGI infrastructure with the support of IN2P3-IRES, INFN-CLOUD-BARI and TR-FC1-ULAKBIM.